FastQCFastQC Report
Thu 9 Feb 2023
EGAF00000362670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000362670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94090248
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6448600.6853632695282087No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT957840.1018001355464596No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)