FastQCFastQC Report
Tue 7 May 2024
EGAF00000364686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000364686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1725
Total Bases134.6 kbp
Sequences flagged as poor quality0
Sequence length22-355
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA77444.869565217391305No Hit
TCATTACATGATGTCATTCAGTGATTGGTATGAGATGCAAGATGCTGGAA22012.753623188405797No Hit
AGAAGTTCTTCATCATTATACATGA18210.55072463768116No Hit
TTTATTACATGATGTCATTCAGTGATTGGTATGAGATGCAAGATGCTGGA1267.304347826086957No Hit
TCATGTATAATGATGAAGAACTTCT1196.898550724637681No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG885.101449275362318No Hit
AGAAGTTCTTCATCATTATACATG462.666666666666667No Hit
TCATGTATAATGATGAAGAACTTC341.971014492753623No Hit
TTATTACATGATGTCATTCAGTGATTGGTATGAGATGCAAGATGCTGGAA191.1014492753623188No Hit
AGAAGTTCTTCATCATTGGATCAAGCTCATCACAGGATGGACCCCAAAGG130.7536231884057971No Hit
TCATGTATAATGATGAAGAACTTCTT70.4057971014492754No Hit
AGAAGTTCTTCATCATTATACAT60.34782608695652173No Hit
TCATGTATAATGATGAAGAACTT50.2898550724637681No Hit
AGAAGTTCTTCATCATTATACATGAA50.2898550724637681No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATACTC40.2318840579710145No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATTTTGCATCTCA40.2318840579710145No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCACCTTGCATCTCA30.17391304347826086No Hit
AGAAGTTCTTCATCATTGAGTCTGAGTAATTCCAGCATCTTGCATCTCAT30.17391304347826086No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAACATCTTGCATCTCA30.17391304347826086No Hit
TCATGTATAATGATGAAGAACT30.17391304347826086No Hit
AGAAGTTCCTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA30.17391304347826086No Hit
TCATTACATGATGTCATTCAGTGATTGATATGAGATGCAAGATGCTGGAA30.17391304347826086No Hit
AGAAGTTCTTCATCATTGAATCTGAAGTAATTCCAGCATCTTGCATCTCA20.11594202898550725No Hit
TCATTACATGATGTCATTCAGTGATTGGTATGAGATGCAAGATGCTAGGA20.11594202898550725No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCACCTCA20.11594202898550725No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCAATCTC20.11594202898550725No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAAACT20.11594202898550725No Hit
AGAAGTTCTTCATCATTGAGTCTGGAGTAATTCCAGCATCTTGCATCTCA20.11594202898550725No Hit
TCGTGTATAATGATGAAGAACTTCT20.11594202898550725No Hit
TCATTACATGATGTCATTCAGTGATTGGTATGAGATGCAAAATGCTGGAA20.11594202898550725No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCGGCATCTTGCATCTCA20.11594202898550725No Hit
TTTATTACATGATGTCATTCAGTGATTGGTATGTAGATGCAAGATGCTGG20.11594202898550725No Hit
AGAAGTTTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCAT20.11594202898550725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)