FastQCFastQC Report
Tue 7 May 2024
EGAF00000364692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000364692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1781
Total Bases573.8 kbp
Sequences flagged as poor quality0
Sequence length135-368
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA93052.21785513756316No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG76342.84110050533408No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTTGCAAGTAAACT90.5053340819764177No Hit
TCATGTATTATATGAATGATGGTGTTTTATGGTTCTTTTGCAAGTAAACT30.16844469399213924No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATACTC30.16844469399213924No Hit
AGAAGTTCTCCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA30.16844469399213924No Hit
AGAAGTTCTTCATCATTGGGTCTGAAGTAATTCCAGCATCTTGCATCTCA30.16844469399213924No Hit
TCAATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACT20.11229646266142618No Hit
AGAAGTTCTTCATCATTGAGTCTGAGGTAATTCCAGCATCTTGCATCTCA20.11229646266142618No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCACCTCA20.11229646266142618No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCAATCTC20.11229646266142618No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAAACT20.11229646266142618No Hit
TCAGTGTATTATATGAATGATGGTTGTTTATGGTTCTTTTGCAAGTAAAC20.11229646266142618No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAGTAAACTGT20.11229646266142618No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGTCAAGTAAACT20.11229646266142618No Hit
AGAAGTTCCTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA20.11229646266142618No Hit
TCATGTATTATATGAATGATGGTGTTTTATGGTTCTTTTTGCAAGTAAAC20.11229646266142618No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCCTGCATCTCA20.11229646266142618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)