FastQCFastQC Report
Tue 7 May 2024
EGAF00000364697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000364697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1388
Total Bases448.7 kbp
Sequences flagged as poor quality0
Sequence length134-365
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA75854.610951008645536No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG54739.409221902017286No Hit
TCATGTATTATATGAATGATGGTGTTTTATGGTTCTTTTGCAAGTAAACT130.9365994236311239No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCACCTCA40.2881844380403458No Hit
AGAAGTTCTCCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA30.21613832853025938No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTAC30.21613832853025938No Hit
AGACAGCTTTCCACAATTTGATCAAGCTCATCACAGGATGGACCCCAAAG30.21613832853025938No Hit
TCATGGTATTATATGAATGATGGTGTTTTATGGTTCTTTTGCAAGTAAAC30.21613832853025938No Hit
TCATGTATTATATGAATGATAGTGTTTATGGTTCTTTTGCAAGTAAACTG20.1440922190201729No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGCAAACTG20.1440922190201729No Hit
AGAAGTTCTTTATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA20.1440922190201729No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTTGCAAGTAAACT20.1440922190201729No Hit
AGAAGTTCTTCATCATTGAGTTTGAAGTAATTCCAGCATCTTGCATCTCA20.1440922190201729No Hit
AGAAGTTCTTCATCATTGAGTCTAGAAGTAATTCCAGCATCTTGCATCTA20.1440922190201729No Hit
AGAAGTTCTTCATCGTTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA20.1440922190201729No Hit
CCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG20.1440922190201729No Hit
TCATGTATTATGTGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG20.1440922190201729No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGTATCTCA20.1440922190201729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)