FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000364703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000364703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences983
Sequences flagged as poor quality0
Sequence length4-355
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGTCT17718.006103763987795No Hit
AGACATGA15916.17497456765005No Hit
TCATATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTTCT676.8158697863682605No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATATGA666.714140386571719No Hit
TCATGTATTGATTGGTATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTTCT515.188199389623601No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACATGA494.984740590030519No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA373.7639877924720246No Hit
TCATGTC333.3570701932858595No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTATGGTGGCAGGTGCTTGCAGTCGTAGCTACTTGTGGGTTGACATGA292.950152594099695No Hit
TCATGTCAACCCACAAGTAGCTACGACTGCAAGCACCTGCCACCATACTTCAGACTCAATGATGAAGAACTTCT262.644964394710071No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAATGATGAAGAACTTCT202.034587995930824No Hit
TCATGTACATGATGTCATTCAGTGATTGGTATGAGATGCAAGATGCTGGA202.034587995930824No Hit
TCATATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTTC191.9328585961342828No Hit
AGACATG181.8311291963377416No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTCT171.7293997965412005No Hit
AGAAGTTCTTCATCATTACTTGCAAAAGAACCATAAACACCATCATTCATATAATACATGA121.2207527975584944No Hit
TCATGT121.2207527975584944No Hit
TCATG111.119023397761953No Hit
AGACTTGCAAAAGAACCATAAACACCATCATTCATATAATACATGA111.119023397761953No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATATG101.017293997965412No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG101.017293997965412No Hit
TCATGTCTT101.017293997965412No Hit
TCATGTATTGATTGGTATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTTC90.9155645981688708No Hit
AGACATGAA90.9155645981688708No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACATG80.8138351983723295No Hit
TCATGTCAACCCACAAGTAGCTACGACTGCAAGCACCTGCCACCATACTTCAGACTCAATGATGAAGAACTTC70.7121057985757884No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTATGGTGGCAGGTGCTTGCAGTCGTAGCTACTTGTGGGTTGACATG40.40691759918616477No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAATGATGAAGAACTTC40.40691759918616477No Hit
TCATATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTT40.40691759918616477No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACATGAA30.3051881993896236No Hit
GGACATG20.20345879959308238No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGT20.20345879959308238No Hit
AGACAT20.20345879959308238No Hit
TCATGTATTATATGAATTTATTACATGATGTCATTCAGTGATTGGTATGA20.20345879959308238No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATATGAA20.20345879959308238No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACA20.20345879959308238No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAATGATGAAGAACTT20.20345879959308238No Hit
AGACATGAAG20.20345879959308238No Hit
TCATGTATTGATTGGTATGAGATGCAAGATGCTGGAATTACTTCAGACTCAAATGATGAAGAACTTCT20.20345879959308238No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTATGGTGGCAGGTGCTTGCAGTCGTAGCTACTTGTGGATTGACATGA20.20345879959308238No Hit
TCATGTCTTC20.20345879959308238No Hit
AGAAGTTCTTCATCATTAAGTCTGAAGTATGGTGGCAGGTGCTTGCAGTCGTAGCTACTTGTGGGTTGACATGA20.20345879959308238No Hit
AGACTTGCAAAAGAACCATAAACACCATCATTCATATAATACATG20.20345879959308238No Hit
TCATGTATTGATTGGTATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTTCTT20.20345879959308238No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTGCAAGTAATGATGAAGAACTTC20.20345879959308238No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTCTT20.20345879959308238No Hit
AGAAGTTCTTCATCATTACTTGCAAAAGAACCATAAACACCATCATTCATATAATACATG20.20345879959308238No Hit
GGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACATGA10.10172939979654119No Hit
TCATGTCAACCCACAAGTAGCTACGACTGCAAGCACCTGCCACCATACTTCAGACTCAATGATGAAGAACTT10.10172939979654119No Hit
AGACGTGA10.10172939979654119No Hit
TCATAGTGAGATGCAAGATGCTTGGAATTACTTCAGACTCAATGATGAAGAACTTCTT10.10172939979654119No Hit
TCATGTCGAACCCACAAGTAGCTACGACTGCTAAGCACCTGCCACCATAC10.10172939979654119No Hit
TCATGTATTGATTGGTATGAGATGCAAGATTGCTGGAATTACTTCAGACTCAAATGATGAAGAACTTCT10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTACTGAAGTAATTCCAGCTATCTTGCATACTCATATGAA10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAGTAATTCCAGCATCTTGCATACTCATACCAATCAATACATGA10.10172939979654119No Hit
AGAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACATGA10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTCGAAGTAATTCCAGCATCTTGCATCTC10.10172939979654119No Hit
AGAAGTTCCTCATCATTACTTGCAAAAGAACCATAAACACCATCATTCATATAATACATG10.10172939979654119No Hit
AGAAGTTCTTCATCATTACTTGCAAAGAACCATAAACACCATCATTCATATAATACATGA10.10172939979654119No Hit
AGAAGTTCTTCATCATTACTTGCAAAAGAACCATAAAACACCATCATTCATATAATACATGA10.10172939979654119No Hit
TCATATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGACTTCT10.10172939979654119No Hit
TCATATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACT10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCAATCTCATATGA10.10172939979654119No Hit
AGACATGAAGG10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAAATATGGTGGCAGGTGCTTGCAGTCGTAGCTACTTGTGGGTTGACATGA10.10172939979654119No Hit
TCAT10.10172939979654119No Hit
TCATGTCTTCT10.10172939979654119No Hit
TCATGTACATGATGTCATTCAGTGATTGGTATTGAGATGCAAGATGCTGG10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATTTTGCATCTCA10.10172939979654119No Hit
AGACTTGCAAAGAACCATAAACACCATCATTCATATAATACATGA10.10172939979654119No Hit
TCATGTATTGATTGGTATGAGATGCAAGATTGCTGGAATTACTTCAGACTCAATGATGAAGAACTTCT10.10172939979654119No Hit
TCATGTATTGATTGGTATGAGATGCAAGATGCTGGAATTACTTCAGACTCAAATGATGAAGAACTTC10.10172939979654119No Hit
TCATATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAAACTTCT10.10172939979654119No Hit
TCATGTACCTTGATTGGTATGAGATGCAAGATGCTGGAATTACTTCAGACTCAATGATGAAGAACTTCT10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTATGGTGGCAGGTGCTTGCAGTCGTAGCTAACTTGTGGATTGACATG10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACATGAAGGCT10.10172939979654119No Hit
GACATGA10.10172939979654119No Hit
TCATGTCAACCCACAAGTAGCTACGACTGCAAGCACCTGCCACCATACTT10.10172939979654119No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAATGATGAAGAACTTAC10.10172939979654119No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTC10.10172939979654119No Hit
TCATGTACGTGATGTCATTCAGTGATTGGTATGAGATGCAAGATGCTGGA10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGTATCTCA10.10172939979654119No Hit
TTCATNGACCCACAAGTAGCTACGACTGCAAGCACCTGCCACCATACTTCAGACTCAATGATGAAGAACTTCT10.10172939979654119No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCATACCAATCAATACATCGA10.10172939979654119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)