FastQCFastQC Report
Tue 7 May 2024
EGAF00000364736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000364736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1704
Total Bases561.1 kbp
Sequences flagged as poor quality0
Sequence length116-369
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG82148.18075117370892No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCA74243.544600938967136No Hit
TCATGTATTATATGAATGATTTTCAGAGGCCAGCCATTTATTACATGATG271.584507042253521No Hit
TCATGTATTATATGAATGATGGTGTTTTATGGTTCTTTTGCAAGTAAACT181.056338028169014No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATACTC80.4694835680751174No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTTGCAAGTAAACT70.41079812206572774No Hit
TCATGTATTATATGAATGATGGTGTTTAATGGTTCTTTTGCAAGTAAACT60.35211267605633806No Hit
GAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCATCTCAT40.2347417840375587No Hit
AGAAGTTCTTCATCATTGAGTCTGAGGTAATTCCAGCATCTTGCATCTCA30.17605633802816903No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAAACT30.17605633802816903No Hit
CCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG30.17605633802816903No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTCGCATCTCA20.11737089201877934No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCACCTTGCATCTCA20.11737089201877934No Hit
TCATGTATTATATGAATGATGGTGTTTGTGGTTCTTTTGCAAGTAAACTG20.11737089201877934No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGCATCTTGCACCTCA20.11737089201877934No Hit
AGAAGTTCTTCATCATTGAGTCTGAAGTAATTCCAGTATCTTGCATCTCA20.11737089201877934No Hit
AGAAGTTCTTCATCATTGAGTTCTGAAGTAATTCCAGCATCTTGCATCTC20.11737089201877934No Hit
TCATGCATTATATGAATGATGGTGTTTATGGTTCTTTTGCAAGTAAACTG20.11737089201877934No Hit
TCATGTATTATATGAATGATGGTGTTTATTGGTTCTTTTGCAAGTAAACT20.11737089201877934No Hit
TCATGTATTATATGAATGATGGTGTTTATGGTTCTTTTGCAGGTAAACTG20.11737089201877934No Hit
TCATTGGTATTATATGAATGATGGTGTTTTATGGTTCTTTTGCAAAGTAA20.11737089201877934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)