FastQCFastQC Report
Tue 4 Apr 2023
EGAF00000492975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000492975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51853342
Sequences flagged as poor quality0
Sequence length75-100
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGC2097120.4044329486033899TruSeq Adapter, Index 4 (100% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)