FastQCFastQC Report
Mon 13 May 2024
EGAF00000493435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000493435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73749688
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length75-100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC2184540.29621006667851935TruSeq Adapter, Index 7 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATG813290.11027707669759904TruSeq Adapter, Index 7 (100% over 49bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)