FastQCFastQC Report
Tue 26 Sep 2023
EGAF00000493571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000493571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39029232
Sequences flagged as poor quality0
Sequence length76
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTC779710.19977590130392525No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC643280.1648200507763002No Hit
CACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGAC447180.11457565959791369No Hit
GTTCACTAGCAACCTCAAACAGACACCATGGTGCACCTGACTCCTGAGGA403770.10345322705811891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)