FastQCFastQC Report
Sat 1 Apr 2023
EGAF00000494669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000494669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10179598
Sequences flagged as poor quality0
Sequence length35-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTAT3236003.178907457838708TruSeq Adapter, Index 22 (97% over 40bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN476580.4681717293747749No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)