FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000494673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000494673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6564045
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTAT2927784.460328958744189TruSeq Adapter, Index 25 (97% over 44bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN67630.10303098165841337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)