FastQCFastQC Report
Wed 8 May 2024
EGAF00000505081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000505081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11196588
Total Bases571 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC40

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC830870.7420742819151692TruSeq Adapter, Index 10 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATG176170.15734257614909114TruSeq Adapter, Index 10 (100% over 49bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)