FastQCFastQC Report
Wed 22 May 2024
EGAF00000510289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510289
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences80985479
Total Bases7.2 Gbp
Sequences flagged as poor quality0
Sequence length90
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT2521250.3113212431576777No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA897590.11083344953729299No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA843930.10420757034727175No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT837490.1034123660613281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)