FastQCFastQC Report
Mon 6 Mar 2023
EGAF00000510291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510291
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences74529561
Sequences flagged as poor quality0
Sequence length90
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT1906300.2557777040978411No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA991090.1329794495904786No Hit
GGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTT958140.12855838504133948No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT855770.11482289557562268No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA849860.11402992163069363No Hit
CCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTA786090.105473585172466No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT758180.10172876236316487No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG756740.10153555043749687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)