FastQCFastQC Report
Thu 23 Mar 2023
EGAF00000510300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510300
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences60664404
Sequences flagged as poor quality0
Sequence length90
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1902810.31366169854730624No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGTAGT1375220.22669307028879737No Hit
GTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGA940660.15505962936683593No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT913680.15061221074553044No Hit
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT857080.1412821924369355No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA681990.11242012696605409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)