FastQCFastQC Report
Wed 15 Mar 2023
EGAF00000510339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510339
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences64882396
Sequences flagged as poor quality0
Sequence length90
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT1409010.2171636818097778No Hit
GTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGA1399700.21572877795696696No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1365860.2105131875832699No Hit
GGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCT1083080.1669297169605142No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT1057300.1629563741758242No Hit
GTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTA1028240.15847750135491298No Hit
GCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTT942680.14529056541006902No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT905940.1396280125043471No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG898670.13850752367406408No Hit
ATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAAT816370.12582303526522046No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT755580.11645377584391303No Hit
GTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAA749550.11552440202732339No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT748430.11535178201495518No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA744500.11474607072155596No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA741630.11430373193986239No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT672230.10360745617347424No Hit
GGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTC663350.1022388260754119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)