FastQCFastQC Report
Fri 6 Jan 2023
EGAF00000510346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510346
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences89157010
Sequences flagged as poor quality0
Sequence length90
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGA2287480.2565675991153135No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT1989520.223147905027322No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG1832610.20554861586318338No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT1800830.20198411768182892No Hit
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT1709100.1916955268015381No Hit
GTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAA1334760.14970892361688667No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT1304930.1463631407109772No Hit
ATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAAT1291500.14485680935239978No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT1241180.13921283362912237No Hit
GGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTC1094520.12276320168206627No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA1069730.11998271364192226No Hit
GGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTT1042200.11689490259935816No Hit
GTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTA998740.11202035599892819No Hit
GCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAA954000.10700224244846256No Hit
ATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACC952930.1068822294511671No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA949410.10648742033856899No Hit
GCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTT906320.10165437355963372No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)