FastQCFastQC Report
Thu 23 Mar 2023
EGAF00000510350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510350
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences63584771
Sequences flagged as poor quality0
Sequence length90
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGA4294820.6754478993090972No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4088390.6429825783283862No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT3337810.5249385894619326No Hit
GCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAA2372680.3731522442693078No Hit
ATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAAT2286750.35963800199893775No Hit
GGGTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACA2125580.33429073763590345No Hit
GGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTC2043000.3213033510807171No Hit
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT2040470.3209054570629813No Hit
GTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAA1973790.3104186692753836No Hit
ATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACC1955510.30754376704447045No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT1856000.2918937932480719No Hit
GTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTA1825450.28708918366632163No Hit
GCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTT1630780.2564733621514497No Hit
GGGGTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTT1607170.25276020888712486No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT1501730.23617762183966973No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG1384210.2176952088102983No Hit
TTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCT1371130.21563811246564057No Hit
CTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCA1271430.19995825730032118No Hit
CTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACC1259680.1981103305381095No Hit
GGAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTC1238180.19472901773916904No Hit
AATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAG1203220.18923084585772904No Hit
GAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCC1160200.18246507485259322No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA1115140.17537847230746495No Hit
GGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCT1102130.17333238488819908No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT1073020.1687542446287964No Hit
CCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTT1058500.16647067896179102No Hit
GTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTTTTA1055270.16596269569013625No Hit
TAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATA1054780.16588563321239294No Hit
GTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGG931720.14653194237343403No Hit
GGGTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTTT929600.14619852920442225No Hit
GGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTT890100.13998634987613623No Hit
GGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTC884930.13917326210076308No Hit
CGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGG878990.13823907614607908No Hit
GAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCAT865970.1361914160231858No Hit
ATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTT857150.1348042914238065No Hit
CATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTT850220.13371440781000848No Hit
ATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTT845090.13290761084914499No Hit
CAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGA826580.12999653643480136No Hit
AATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAA797240.12538222399196816No Hit
CTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCT797100.12536020614118434No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA774080.1217398423908769No Hit
ATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAG772020.12141586544362959No Hit
GGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTTTTAGGGGAAT745890.11730639086519631No Hit
CCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATA730210.11484039157741088No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC698670.10988008433654656No Hit
GATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAAC687240.10808248409041214No Hit
ATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGT670500.10544977821812082No Hit
CCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTA664710.104539182817848No Hit
GGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTG661370.10401389980629168No Hit
TTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGGAGT646380.1016564170687978No Hit
CGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACT646080.10160923595997537No Hit
CGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTT642400.10103048102508697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)