FastQCFastQC Report
Fri 24 Mar 2023
EGAF00000510351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510351
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences63584771
Sequences flagged as poor quality0
Sequence length90
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTCGA4836290.7606050826226928No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT4129460.6494416721261762No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3028010.47621623108464134No Hit
GGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCTTC2498370.39291955616227664No Hit
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT2253070.3543411361818068No Hit
GCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAA2114810.3325969358291784No Hit
GGGTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACA2106280.33125541963499405No Hit
GTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTTGTCTA1922590.30236642670302294No Hit
GCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTT1854950.29172865936719344No Hit
ATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAAT1710380.26899208302566663No Hit
GGGGTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTT1702340.2677276293092256No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT1653190.2599977909804849No Hit
GTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAA1561860.24563428875131124No Hit
ATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACC1544370.24288363010696382No Hit
GGAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTC1424620.22405050416867903No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT1368630.21524493655878701No Hit
GAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCC1307320.20560269061911068No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG1292980.20334743361739874No Hit
GGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCT1277690.20094276977108247No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA1207690.18993384437918318No Hit
CTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATACTACGGTCA1185680.18647232369524458No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT1154680.18159694245026062No Hit
TTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCT1154160.18151516186163508No Hit
GGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTC1119130.1760059810548032No Hit
CCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTT1113270.17508437672913849No Hit
CTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACC1091590.17167475526490455No Hit
GGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTT1026660.1614631906121043No Hit
GTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTTTTA1003200.1577736279021906No Hit
GGGTAGAGGGGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTTT968860.1523729636456503No Hit
AATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAG931280.1464627434138278No Hit
CATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTT906060.14249638486548924No Hit
ATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCTTTTTT839950.1320992411846541No Hit
GTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGG836180.13150633191711897No Hit
TAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATA830970.13068695332723618No Hit
CGGGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTT800110.125833589933036No Hit
CGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCTGG777540.1222839978459622No Hit
GGGTGCTATAGGGTAAATACGGGTCCTATTTCAAAGATTTTTAGGGGAAT777120.1222179442936108No Hit
GAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCAT759960.11951918486896808No Hit
CCCGGACGTCTAAACCAAACCACTTTCACCGCTACACGACCGGGGGTATA711680.11192617175581242No Hit
GGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTG689380.10841904266667879No Hit
CAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGA687910.1081878552334489No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA686830.10801800324168817No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC670230.10540731522018063No Hit
GGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTCGTACA647670.10185929583673423No Hit
CTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCT643060.10113427946449631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)