FastQCFastQC Report
Sat 11 Mar 2023
EGAF00000510361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000510361
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences77181938
Sequences flagged as poor quality0
Sequence length90
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGAATGCTGGAGATTGTAATGGGTATGGAGACATATCATATAAGTAAT1580380.20476034172658375No Hit
GGGTGAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACA1159630.15024629207937226No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT1020500.13222005386804359No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT1013750.13134549692183164No Hit
CTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTCCTACTTA1002940.1299449101679722No Hit
GGAGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTC994000.1287866080792115No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT954460.12366364783428993No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT939750.12175776151150805No Hit
GGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTA897110.11623315289128915No Hit
GGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTT870660.11280618530205863No Hit
GGGCCATGGGGTTGGCTTGAAACCAGCTTTGGGGGGTTCGATTCCTTCCT858080.11117627028230362No Hit
GCCCATTTGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGAT800190.10367581078360587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)