FastQCFastQC Report
Fri 3 May 2024
EGAF00000511635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40809179
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length75-76
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGC705770.17294393499070393TruSeq Adapter, Index 7 (100% over 50bp)
CCTCTGTCCACTGCTTTCGTGAAGACAAGATGAAGTTCACAATTGTCTTT484440.1187085875949624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)