FastQCFastQC Report
Wed 1 May 2024
EGAF00000511664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21270312
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCA314710.14795739714584347No Hit
CAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTA251430.11820701078573742No Hit
CTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTG245660.11549430962742811No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT236710.1112865669295307No Hit
CCTCACTAAACCATCCAATCGGTAGTAGCGACGGGCGGTGTGTACAAAGG225270.10590817849780482No Hit
CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCA215440.10128671361285156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)