FastQCFastQC Report
Wed 1 May 2024
EGAF00000511726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511726
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25208774
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length75-76
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGG316680.1256229279535768No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT314790.12487318899364165No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC308490.1223740591271912No Hit
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT297960.1181969420646954No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT276060.10950949062417713No Hit
CGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACG254220.10084584042048218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)