FastQCFastQC Report
Wed 1 May 2024
EGAF00000511729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29499545
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length75-76
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG560150.18988428465591586No Hit
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGC551090.18681305084536048No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGC416030.14102929384165078No Hit
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT412370.13978859673937344No Hit
CGAGAACTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCC365150.12378157019031989No Hit
CAGGCATCCTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACC336290.11399836844941168No Hit
CTGGAAGCCACTGATGCAGCTCCCCTCGCTCTGCAGGATGTAGGCACTGG320030.10848641902781891No Hit
CCTCGCTCTGCAGGATGTAGGCACTGGGTGGCACGGGGTACTGGACTCCA296120.10038120926949891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)