FastQCFastQC Report
Fri 3 May 2024
EGAF00000511755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41449168
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTG507250.12237881349029733No Hit
CTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTC422180.10185487921012068No Hit
TCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCT414540.10001165765257339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)