FastQCFastQC Report
Wed 1 May 2024
EGAF00000511765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26389045
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT504430.19115129024184088No Hit
CTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTG421900.1598769489384705No Hit
TCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCT372300.14108127065606202No Hit
CTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTC343510.13017144045947854No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGC323310.12251674890091703No Hit
CTCAGAGCTGCTCTTCCTCTGTGGCCAGTTGGGGACCAGCATCATGAAGT312320.11835214195890756No Hit
GTGAAATCCTGGGCAGGAGTTCCGATGCCGATAGTGCCGAAGTACTCCAT305570.1157942623539427No Hit
CTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGAT282320.10698378815906374No Hit
CAGGCATCCTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACC278670.1056006384467494No Hit
CTGGAAGCCACTGATGCAGCTCCCCTCGCTCTGCAGGATGTAGGCACTGG270500.10250465676192526No Hit
CAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGGAGGAGCCGGTG266940.10115561211101046No Hit
CGAGAACTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCC266350.10093203448628019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)