FastQCFastQC Report
Sun 2 Apr 2023
EGAF00000511765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26389045
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCTTTTAACAATGGCAAGTTTGATATCT465740.17648990329130895No Hit
CTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTGAGCAGCTGACCACCATGTCGCCATC384200.1455907176633334No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGCAGAGAGGTGCCGGTGTCAACAATGG297220.1126300705463195No Hit
GTGAAATCCTGGGCAGGAGTTCCGATGCCGATAGTGCCGAAGTACTCCATATCCAGGTAGTTCTCCAGGGGCTGT292450.11082250229214434No Hit
CTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCCTGAGCGAGACGGAACCT270890.10265244536132323No Hit
CAGGCATCCTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCCTGAGCGAGA269240.10202718590233183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)