FastQCFastQC Report
Wed 1 May 2024
EGAF00000511766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26389045
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT419520.1589750595370162No Hit
CTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTG302490.11462711136382542No Hit
CGGTGATCTGCCAGTAACCCTCGACGGTAACAGGCACCCAGTTCAGACTT278940.105702953630948No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGC267150.10123519058760937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)