FastQCFastQC Report
Thu 2 May 2024
EGAF00000511773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31844296
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTG813520.2554680436333088No Hit
CTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGTC633130.19882053602315466No Hit
TCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCT615110.19316175179379064No Hit
CGAGAACTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCC554410.17410025330753112No Hit
CTGGAAGCCACTGATGCAGCTCCCCTCGCTCTGCAGGATGTAGGCACTGG530400.16656044146807328No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGC523120.16427431776164875No Hit
CTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGAT499000.1566999628442092No Hit
CAGGCATCCTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACC483310.1517728638120937No Hit
GCCAGATCTTCCTGGGAGGTGGCTGAAGAGACTTAGGCTTAAGCCACGGG468060.14698393709190494No Hit
GTGAAATCCTGGGCAGGAGTTCCGATGCCGATAGTGCCGAAGTACTCCAT466660.14654429791759252No Hit
CTCAGAGCTGCTCTTCCTCTGTGGCCAGTTGGGGACCAGCATCATGAAGT466420.1464689312019961No Hit
CAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGGAGGAGCCGGTG453100.14228607848639518No Hit
CAGACTTCCAGTGTAGTAAGAAGAGTCAATGCCACCAAAGATCACCACGC435000.136602172018499No Hit
CTTCCACCTACCAGTCCACCAGCGAGACAGTCTCCATCACCTACGGCACC381250.11972316800471895No Hit
CTTTGACAACATCTGGAACCAGGGCCTGGTTTCTCAGGACCTCTTCTCTG375190.11782015843590952No Hit
CCAGGATCCAAAGCTCTCCAGATTCGGTGGGGAGGTTCATGCCCTGGAAG358740.1126543981377387No Hit
TTTTATTCTACGTTATTGGTAGGACAGGGAACAGGGCCAAGACCTCCACA348060.10930057929369832No Hit
CTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTGCTGGGGC335610.10539093092213439No Hit
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG329350.10342511575699459No Hit
CTTTGGTGGCATTGACTCTTCTTACTACACTGGAAGTCTGAACTGGGTGC328820.10325868092671919No Hit
CGCTGGTGGACTGGTAGGTGGAAGAATCCTCAGGGTTGAAGCGGTTGTGG327020.1026934305597461No Hit
CGGTGATCTGCCAGTAACCCTCGACGGTAACAGGCACCCAGTTCAGACTT325050.1020747954358922No Hit
CAGAATCCTAACTATTTCTGAGGAAACTGCAGGTCCAAAATGTGGCTGCT320840.10075273763313845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)