FastQCFastQC Report
Sun 2 Apr 2023
EGAF00000511773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31844296
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTGAGCAGCTGACCACCATGTCGCCATC730490.22939430031676628No Hit
CGAGAACTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCCTGCCCGACATCGTCTTCACCATCAA526760.165417379614861No Hit
CTGGAAGCCACTGATGCAGCTCCCCTCGCTCTGCAGGATGTAGGCACTGGGTGGCACGGGGTACTGGACTCCATT479610.15061096027998233No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGCAGAGAGGTGCCGGTGTCAACAATGG477780.15003628907355968No Hit
CTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCCTGAGCGAGACGGAACCT475750.14939881227080667No Hit
CAGGCATCCTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCCTGAGCGAGA462860.145350991587316No Hit
GTGAAATCCTGGGCAGGAGTTCCGATGCCGATAGTGCCGAAGTACTCCATATCCAGGTAGTTCTCCAGGGGCTGT442700.13902018747721726No Hit
GCCAGATCTTCCTGGGAGGTGGCTGAAGAGACTTAGGCTTAAGCCACGGGGGCCAGGCCGACCTGGTTGTTTGCC442200.1388631734863914No Hit
CAGACTTCCAGTGTAGTAAGAAGAGTCAATGCCACCAAAGATCACCACGCTGCCACTCTGGTCATCGGCGCTGAG387290.12161989701389538No Hit
CTCAGAGCTGCTCTTCCTCTGTGGCCAGTTGGGGACCAGCATCATGAAGTGGATGGTGGTGGTCTTGGTCTGCCT369680.11608986425700853No Hit
CTTCCACCTACCAGTCCACCAGCGAGACAGTCTCCATCACCTACGGCACCGGCAGCATGACAGGCATCCTCGGAT340010.10677265404140195No Hit
CCAGGATCCAAAGCTCTCCAGATTCGGTGGGGAGGTTCATGCCCTGGAAGCCACTGATGCAGCTCCCCTCGCTCT337540.10599700492672219No Hit
TTTTATTCTACGTTATTGGTAGGACAGGGAACAGGGCCAAGACCTCCACACTCCCCTGGGAAGAACAGTCAGGAG332860.10452735397259215No Hit
CTTTGACAACATCTGGAACCAGGGCCTGGTTTCTCAGGACCTCTTCTCTGTCTACCTCAGCGCCGATGACCAGAG328510.10316133225240715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)