FastQCFastQC Report
Thu 2 May 2024
EGAF00000511774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31844296
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACTCCATTGATGGTGAAGACGATGTCGGGCAGGCTGCTGATGGCTG674130.2116956832708753No Hit
CGGTGATCTGCCAGTAACCCTCGACGGTAACAGGCACCCAGTTCAGACTT580700.1823560489451549No Hit
CTCCGATGTCGCTCTGGATGTTGGCAATGGGGCTGGTTGGGCCGGTCAGC507710.15943514656439572No Hit
CGAGAACTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCC498190.1564456001790713No Hit
CTGGAAGCCACTGATGCAGCTCCCCTCGCTCTGCAGGATGTAGGCACTGG471140.14795114327539222No Hit
CTCAGAGCTGCTCTTCCTCTGTGGCCAGTTGGGGACCAGCATCATGAAGT417080.13097479058730016No Hit
GCCAGATCTTCCTGGGAGGTGGCTGAAGAGACTTAGGCTTAAGCCACGGG416530.13080207519739173No Hit
CTTCCACCTACCAGTCCACCAGCGAGACAGTCTCCATCACCTACGGCACC408740.12835579722032478No Hit
CTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGAT407900.12809201371573734No Hit
CAGGCATCCTCGGATACGACACTGTCCAGGTTGGAGGCATCTCTGACACC397120.12470679207353177No Hit
CAGACTTCCAGTGTAGTAAGAAGAGTCAATGCCACCAAAGATCACCACGC396790.12460316283958671No Hit
CAAGACTGGAGCAGTAGACTGAGGGCACCCACAGGTTGGAGGAGCCGGTG387650.12173294708728997No Hit
GTGAAATCCTGGGCAGGAGTTCCGATGCCGATAGTGCCGAAGTACTCCAT386280.12130272875242713No Hit
CTTTGACAACATCTGGAACCAGGGCCTGGTTTCTCAGGACCTCTTCTCTG339680.10666902480745688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)