FastQCFastQC Report
Sat 25 May 2024
EGAF00000511924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000511924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106518290
Total Bases10.6 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC3020250.28354285447128375Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1128670.10596020645844013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)