FastQCFastQC Report
Wed 22 Mar 2023
EGAF00000525371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000525371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55357411
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG829370.14982095170599652No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG784620.14173711989529278No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG763680.13795442854074227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)