FastQCFastQC Report
Wed 8 May 2024
EGAF00000537761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000537761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Total Bases200 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NGGNGGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN174950.87475No Hit
NGGNGGNGNNGNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN97900.4895No Hit
NGGNGGNGNNGNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN89860.4493No Hit
NGGNGGNGNNGNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN67150.33575No Hit
NGGNAGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN29420.1471No Hit
NAGNGGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN27110.13555No Hit
NGANGGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN25190.12595No Hit
NGGNGANGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN24610.12305No Hit
NGCNGGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN24530.12265No Hit
NGGNGGNGNNANGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN23840.11919999999999999No Hit
NGGNGGNANNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN23220.1161No Hit
NGGNTGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN22860.11429999999999998No Hit
NTGNGGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN21700.1085No Hit
NGTNGGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN21510.10755No Hit
NCGNGGNGNNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN20760.1038No Hit
NGGNGGNGNNTNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN20070.10035000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)