FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000538097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000538097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2000000
Sequences flagged as poor quality0
Sequence length100
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN134930.67465No Hit
AGNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN35140.17570000000000002No Hit
GANNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN28350.14175No Hit
TGNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN20360.1018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)