FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000538099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000538099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298011
Sequences flagged as poor quality0
Sequence length100
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN34791.1674065722406222No Hit
AGNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN9060.30401562358436435No Hit
GANNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN8060.27045981524171925No Hit
GCNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN5240.17583243571546017No Hit
TGNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN5130.1721412967977692No Hit
GTNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN5030.1687857159635047No Hit
CGNNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN4740.15905453154413765No Hit
AANNGNNGNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN4030.13522990762085962No Hit
GGNNGNNGNNNGTNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN3210.10771414477989066No Hit
GGNNGNNTNNNGGNNNNGNNNNNGNNNNNNNNNNNGNNNNNNNNNNNNNN3180.10670747052961133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)