FastQCFastQC Report
Wed 8 May 2024
EGAF00000538557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000538557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1888021
Total Bases188.8 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN53711728.448677212806427No Hit
NNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN39819221.090443379602238No Hit
NNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN39675721.014437869070314No Hit
NNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN37458419.84003355894876No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1813719.60640797957226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)