FastQCFastQC Report
Wed 27 Sep 2023
EGAF00000590691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000590691
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences40505163
Sequences flagged as poor quality0
Sequence length90
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGG1370450.33833958401796826No Hit
CAGCCCCCCCGGCAGCAGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAG1316560.3250351072528705No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT780480.19268654714461958No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC773060.1908546819080817Illumina Single End PCR Primer 1 (100% over 50bp)
AGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGT476860.11772820171097695No Hit
GCCGAATCCCGGGGCCGAGGGAGCGAGACCCGTCGCCGCGCTCTCCCCCC439540.10851456146467058No Hit
AGCCCCCCCGGCAGCAGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAGA423980.10467307587430275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)