FastQCFastQC Report
Fri 10 Feb 2023
EGAF00000590726

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000590726
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences120015018
Sequences flagged as poor quality0
Sequence length90
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9916190.8262457620095512No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTATCCAGAATCTCGTA5852590.487654803334696TruSeq Adapter, Index 9 (97% over 37bp)
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT3509010.29238090852929755No Hit
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC2514130.2094846163335992No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1901870.15846933422948786No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1305280.10875972205411825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)