FastQCFastQC Report
Fri 10 Feb 2023
EGAF00000590734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000590734
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences120017733
Sequences flagged as poor quality0
Sequence length90
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATC5803610.4835627081874643No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT4624440.38531306036250496No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTTCAAGGTATCTCGTA3121420.260079900026107TruSeq Adapter, Index 1 (97% over 37bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2788560.232345665119337No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT2265710.18878126951456414No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG2204690.1836970208394121No Hit
GTCCCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAA1574050.13115145242745088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)