FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000605186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16704772
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTATG533940.31963321618517154TruSeq Adapter, Index 22 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTACGTAATCTCGTAT406920.24359506373388393TruSeq Adapter, Index 22 (97% over 40bp)
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGC293880.17592577737666817No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGG290890.1741358696784368No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTT261640.15662590306530375No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT243260.14562305908754697No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGA173550.10389246857125617No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)