FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000605187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9356086
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC605560.6472364619136677TruSeq Adapter, Index 5 (100% over 51bp)
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGC118800.12697617358369728No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGG117510.125597391900844No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTT116160.1241544808373929No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT111160.11881036578757401No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)