FastQCFastQC Report
Tue 27 Sep 2022
EGAF00000605287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31997190
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATG2982870.9322287363359095TruSeq Adapter, Index 19 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTAT1038690.3246191306174073TruSeq Adapter, Index 19 (97% over 40bp)
ACTAGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAA367090.11472569935047422No Hit
ACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATCTA353640.11052220523114686No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTT331220.10351533994078854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)