FastQCFastQC Report
Tue 27 Sep 2022
EGAF00000605292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24884190
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGC394660.1585986925835239No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGG394060.15835757563336397No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTT382200.15359149725186955No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTATG376690.15137723992623428TruSeq Adapter, Index 7 (97% over 36bp)
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT339390.1363878028579592No Hit
ACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGG271360.10904915932566019No Hit
ACTAGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTC270860.10884822853386025No Hit
TCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGAGGGTTATAAGCT259860.10442775111426171No Hit
ACTAGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAA248890.10001932954217116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)