FastQCFastQC Report
Mon 12 Sep 2022
EGAF00000605311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7084436
Sequences flagged as poor quality0
Sequence length51
%GC46

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC2639503.725772947910038TruSeq Adapter, Index 1 (100% over 51bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC178900.2525253951055525TruSeq Adapter, Index 1 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCCGTCACATCACGATCTCGTATGCC75060.10595056543668403TruSeq Adapter, Index 1 (98% over 51bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)