FastQCFastQC Report
Tue 13 Sep 2022
EGAF00000605313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22788581
Sequences flagged as poor quality0
Sequence length51
%GC41

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGCC2339031.0264044084184092TruSeq Adapter, Index 6 (100% over 51bp)
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTT366760.160940253366368No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT345010.15139599960173036No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGG343190.1505973539993561No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGC341840.15000495204155098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)