FastQCFastQC Report
Mon 12 Sep 2022
EGAF00000605366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7092049
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC491470.6929873157954775TruSeq Adapter, Index 5 (100% over 51bp)
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGC88590.12491453457244867No Hit
GGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCCTTTAAGAGTT87920.12396981464736073No Hit
GGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTAAGACCGTCTGG86600.1221085753919636No Hit
GGGCCATACTAGTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGT83800.11816049212293937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)