FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000605434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6660113
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTATG355320.5335044615609374TruSeq Adapter, Index 21 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTAT96890.14547801215985373TruSeq Adapter, Index 21 (97% over 40bp)

[OK]Adapter Content

Adapter graph