FastQCFastQC Report
Wed 14 Sep 2022
EGAF00000605491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000605491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31799495
Sequences flagged as poor quality0
Sequence length42
%GC56

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAG4102171.2900110520623047No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATC3644261.1460119099375634TruSeq Adapter, Index 4 (100% over 42bp)
GTCCGGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCC1938900.6097266638982789No Hit
GGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGC1919480.6036196486768107No Hit
GTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGCCC1642510.5165207812262427No Hit
CCGGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGA1579130.4965896470997416No Hit
GCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGC1268590.39893400822874703No Hit
GGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCC1223530.3847639718806855No Hit
AGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGG1189860.37417575341998355No Hit
GTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGCCCGTG1051900.33079141665614503No Hit
GGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGCCCGT978200.3076149479732304No Hit
GGTCCGGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGC878150.2761521841777676No Hit
CGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGCC864980.2720106089735073No Hit
GGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCG831680.261538744561824No Hit
CGGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCCAG610080.19185210331170355No Hit
GCCGCGCCGAGCCGGGCCCGTGGCCCGCCGGTCCCCGTCCCG590730.1857671010184281No Hit
GTCCGCTCCGGGCCGGGACGGGGTCCGGGGAGCGTGGTTTGG457620.14390794570794285No Hit
GCTGGCAGGTCCCAGAAGCAGGAGATGGCCGAGAAGATGGTC453220.14252427593582853No Hit
GCGGGGGGCCCGGCGGGGCGTGCGCGTCCGGCGCCGTCCGTC434580.13666254762850794No Hit
GGGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAG369910.11632574668245517No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA333460.10486330050209916No Hit
GGGGGCCCGGCGGGGCGTGCGCGTCCGGCGCCGTCCGTCCTT325780.1024481678089542No Hit
GTGCTGGCAGGTCCCAGAAGCAGGAGATGGCCGAGAAGATGG324740.1021211185900908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)