FastQCFastQC Report
Wed 22 Feb 2023
EGAF00000627306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000627306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46248214
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTATCTCGTATGC1428860.3089546333616256TruSeq Adapter, Index 27 (98% over 50bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)